add function integration, tests and docs

docs/source/_static/custom.css

@@ -5,3 +5,9 @@
 table.indextable tr.cap {
   background-color: #333;
 }
+/* move doc link a bit up */
+.viewcode-back {
+    float: right;
+    position: relative;
+    top: -1.5em;
+}

docs/source/conf.py

@@ -34,7 +34,8 @@ release = '2019.5.19'
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
 extensions = [
-  'sphinx.ext.autodoc'
+  'sphinx.ext.autodoc',
+  'sphinx.ext.viewcode',
 ]
 
 # Add any paths that contain templates here, relative to this directory.
@@ -52,6 +53,7 @@ exclude_patterns = []
 # a list of builtin themes.
 #
 html_theme = 'alabaster'
+pygments_style = 'solarized-dark'
 
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
@@ -66,6 +68,8 @@ html_theme_options = {
   'base_bg': '#292b2e',
   'base_text': '#b2b2b2',
   'body_text': '#b2b2b2',
+  'viewcode_target_bg': '#292b2e',
+  'pre_bg': '#25272c',
   'code_text': '#b2b2b2',
   'code_hover': 'transparent',
   'sidebar_text': '#b2b2b2',
@@ -76,6 +80,6 @@ html_theme_options = {
   'highlight_bg': '#444F65',
   'xref_bg': 'transparent',
   'xref_border': 'transparent',
-  'seealso_bg': '#3c3c3c',
+  'seealso_bg': '#25272c',
   'seealso_border': '#2C2C2C',
 }

docs/source/fit.rst

@@ -1,7 +0,0 @@
-fit module
-==========
-
-.. automodule:: fit
-    :members:
-    :undoc-members:
-    :show-inheritance:

docs/source/modules.rst

@@ -6,7 +6,5 @@ src
 
    data
    date
-   fit
    geometry
-   solver
-   solver_model
+   numerical

docs/source/numerical.rst

@@ -0,0 +1,46 @@
+numerical package
+=================
+
+Submodules
+----------
+
+numerical.fit module
+--------------------
+
+.. automodule:: numerical.fit
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+numerical.integration module
+----------------------------
+
+.. automodule:: numerical.integration
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+numerical.ode module
+--------------------
+
+.. automodule:: numerical.ode
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+numerical.ode\_model module
+---------------------------
+
+.. automodule:: numerical.ode_model
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: numerical
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/source/solver.rst

@@ -1,7 +0,0 @@
-solver module
-=============
-
-.. automodule:: solver
-    :members:
-    :undoc-members:
-    :show-inheritance:

docs/source/solver_model.rst

@@ -1,7 +0,0 @@
-solver\_model module
-====================
-
-.. automodule:: solver_model
-    :members:
-    :undoc-members:
-    :show-inheritance: