update packages

lisp/org-roam/org-roam-db.el

@@ -654,12 +654,14 @@ database, see `org-roam-db-sync' command."
       (add-hook 'kill-emacs-hook #'org-roam-db--close-all)
       (advice-add #'rename-file :after  #'org-roam-db-autosync--rename-file-a)
       (advice-add #'delete-file :before #'org-roam-db-autosync--delete-file-a)
+      (advice-add #'vc-delete-file :around #'org-roam-db-autosync--vc-delete-file-a)
       (org-roam-db-sync))
      (t
       (remove-hook 'find-file-hook  #'org-roam-db-autosync--setup-file-h)
       (remove-hook 'kill-emacs-hook #'org-roam-db--close-all)
       (advice-remove #'rename-file #'org-roam-db-autosync--rename-file-a)
       (advice-remove #'delete-file #'org-roam-db-autosync--delete-file-a)
+      (advice-remove #'vc-delete-file #'org-roam-db-autosync--vc-delete-file-a)
       (org-roam-db--close-all)
       ;; Disable local hooks for all org-roam buffers
       (dolist (buf (org-roam-buffer-list))
@@ -687,6 +689,17 @@ FILE is removed from the database."
              (org-roam-file-p file))
     (org-roam-db-clear-file (expand-file-name file))))
 
+(defun org-roam-db-autosync--vc-delete-file-a (fun file)
+  "Maintain cache consistency on file deletion by FUN.
+FILE is removed from the database."
+  (let ((org-roam-file-p (and (not (auto-save-file-name-p file))
+                              (not (backup-file-name-p file))
+                              (org-roam-file-p file))))
+    (apply fun `(,file))
+    (when (and org-roam-file-p
+               (not (file-exists-p file)))
+      (org-roam-db-clear-file (expand-file-name file)))))
+
 (defun org-roam-db-autosync--rename-file-a (old-file new-file-or-dir &rest _args)
   "Maintain cache consistency of file rename.
 OLD-FILE is cleared from the database, and NEW-FILE-OR-DIR is added."

lisp/org-roam/org-roam-node.el

@@ -166,6 +166,10 @@ This path is relative to `org-roam-directory'."
   :group 'org-roam
   :type 'string)
 
+(defvar org-roam-link-type "roam"
+  "Link type for org-roam nodes.
+Replaced by `id' automatically when `org-roam-link-auto-replace' is non-nil.")
+
 (defvar org-roam-node-history nil
   "Minibuffer history of nodes.")
 
@@ -767,7 +771,7 @@ The INFO, if provided, is passed to the underlying `org-roam-capture-'."
     (deactivate-mark)))
 
 ;;;;; [roam:] link
-(org-link-set-parameters "roam" :follow #'org-roam-link-follow-link)
+(org-link-set-parameters org-roam-link-type :follow #'org-roam-link-follow-link)
 (defun org-roam-link-follow-link (title-or-alias)
   "Navigate \"roam:\" link to find and open the node with TITLE-OR-ALIAS.
 Assumes that the cursor was put where the link is."
@@ -796,7 +800,7 @@ Assumes that the cursor was put where the link is."
              node)
         (goto-char (org-element-property :begin link))
         (when (and (org-in-regexp org-link-any-re 1)
-                   (string-equal type "roam")
+                   (string-equal type org-roam-link-type)
                    (setq node (save-match-data (org-roam-node-from-title-or-alias path))))
           (replace-match (org-link-make-string
                           (concat "id:" (org-roam-node-id node))
@@ -806,7 +810,7 @@ Assumes that the cursor was put where the link is."
   "Replace all \"roam:\" links in buffer with \"id:\" links."
   (interactive)
   (org-with-point-at 1
-    (while (re-search-forward org-link-bracket-re nil t)
+    (while (search-forward (concat "[[" org-roam-link-type ":") nil t)
       (org-roam-link-replace-at-point))))
 
 (add-hook 'org-roam-find-file-hook #'org-roam--replace-roam-links-on-save-h)

lisp/org-roam/org-roam-pkg.el

@@ -1,5 +1,5 @@
 ;; -*- no-byte-compile: t; lexical-binding: nil -*-
-(define-package "org-roam" "20250609.820"
+(define-package "org-roam" "20250701.528"
   "A database abstraction layer for Org-mode."
   '((emacs         "26.1")
     (dash          "2.13")
@@ -7,8 +7,8 @@
     (emacsql       "4.1.0")
     (magit-section "3.0.0"))
   :url "https://github.com/org-roam/org-roam"
-  :commit "c17295134510c8759baad0e8a9f151029d5e5fe1"
-  :revdesc "c17295134510"
+  :commit "89dfaef38b6caa3027f20f96a551dc8f194ac533"
+  :revdesc "89dfaef38b6c"
   :keywords '("org-mode" "roam" "convenience")
   :authors '(("Jethro Kuan" . "jethrokuan95@gmail.com"))
   :maintainers '(("Jethro Kuan" . "jethrokuan95@gmail.com")))

lisp/org-roam/org-roam.el

@@ -5,8 +5,8 @@
 ;; Author: Jethro Kuan <jethrokuan95@gmail.com>
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
-;; Package-Version: 20250609.820
-;; Package-Revision: c17295134510
+;; Package-Version: 20250701.528
+;; Package-Revision: 89dfaef38b6c
 ;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.6") (emacsql "4.1.0") (magit-section "3.0.0"))
 
 ;; This file is NOT part of GNU Emacs.

lisp/org-roam/org-roam.info

@@ -24,7 +24,7 @@ File: org-roam.info,  Node: Top,  Next: Introduction,  Up: (dir)
 Org-roam User Manual
 ********************
 
-This manual is for Org-roam version 2.3.0.
+This manual is for Org-roam version 2.3.1.
 
      Copyright (C) 2020-2025 Jethro Kuan <jethrokuan95@gmail.com>