update of packages

2023-11-04 19:26:41 +01:00
parent e162a12b58
commit 3b54a3236d
726 changed files with 297673 additions and 34585 deletions
--- a/lisp/org-roam/org-roam-capture.el
+++ b/lisp/org-roam/org-roam-capture.el
@@ -6,7 +6,7 @@
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
 ;; Version: 2.2.2
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (emacsql "3.0.0") (emacsql-sqlite "1.0.0") (magit-section "3.0.0"))
+;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (emacsql "20230228") (magit-section "3.0.0"))

 ;; This file is NOT part of GNU Emacs.

--- a/lisp/org-roam/org-roam-db.el
+++ b/lisp/org-roam/org-roam-db.el
@@ -6,7 +6,7 @@
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
 ;; Version: 2.2.2
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (emacsql "3.0.0") (emacsql-sqlite "1.0.0") (magit-section "3.0.0"))
+;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (emacsql "20230228") (magit-section "3.0.0"))

 ;; This file is NOT part of GNU Emacs.

@@ -36,7 +36,12 @@
 (defvar org-outline-path-cache)

 ;;; Options
-(defcustom org-roam-database-connector 'sqlite
+(defcustom org-roam-database-connector (if (and (progn
+                                                  (require 'emacsql-sqlite-builtin nil t)
+                                                  (functionp 'emacsql-sqlite-builtin))
+                                                (functionp 'sqlite-open))
+                                           'sqlite-builtin
+                                         'sqlite)
  "The database connector used by Org-roam.
 This must be set before `org-roam' is loaded.  To use an alternative
 connector you must install the respective package explicitly.
--- a/lisp/org-roam/org-roam-log.el
+++ b/lisp/org-roam/org-roam-log.el
@@ -6,7 +6,7 @@
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
 ;; Version: 2.2.2
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (emacsql "3.0.0") (emacsql-sqlite "1.0.0") (magit-section "3.0.0"))
+;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (emacsql "20230228") (magit-section "3.0.0"))

 ;; This file is NOT part of GNU Emacs.

--- a/lisp/org-roam/org-roam-migrate.el
+++ b/lisp/org-roam/org-roam-migrate.el
@@ -6,7 +6,7 @@
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
 ;; Version: 2.2.2
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (emacsql "3.0.0") (emacsql-sqlite "1.0.0") (magit-section "3.0.0"))
+;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (emacsql "20230228") (magit-section "3.0.0"))

 ;; This file is NOT part of GNU Emacs.

--- a/lisp/org-roam/org-roam-mode.el
+++ b/lisp/org-roam/org-roam-mode.el
@@ -6,7 +6,7 @@
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
 ;; Version: 2.2.2
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (emacsql "3.0.0") (emacsql-sqlite "1.0.0") (magit-section "3.0.0"))
+;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (emacsql "20230228") (magit-section "3.0.0"))

 ;; This file is NOT part of GNU Emacs.

--- a/lisp/org-roam/org-roam-node.el
+++ b/lisp/org-roam/org-roam-node.el
@@ -112,6 +112,12 @@ It takes a single argument REF, which is a propertized string."
  :group 'org-roam
  :type  '(function))

+(defcustom org-roam-ref-prompt-function nil
+  "Function to prompt for ref strings in `org-roam-ref-add'.
+Should take no arguments, prompt the user, and return a string."
+  :group 'org-roam
+  :type 'function)
+
 ;;;; Completion-at-point
 (defcustom org-roam-completion-everywhere nil
  "When non-nil, provide link completion matching outside of Org links."
@@ -210,6 +216,10 @@ This path is relative to `org-roam-directory'."
    (_
     (org-roam-node-title node))))

+(cl-defmethod org-roam-node-category ((node org-roam-node))
+  "Return the category for NODE."
+  (cdr (assoc-string "CATEGORY" (org-roam-node-properties node))))
+
 ;;; Nodes
 ;;;; Getters
 (defun org-roam-node-at-point (&optional assert)
@@ -226,11 +236,10 @@ populated."
        (t (org-with-wide-buffer
            (while (not (or (org-roam-db-node-p)
                            (bobp)
-                            ;; Handle case where top-level is a heading
-                            (= (funcall outline-level)
-                               (save-excursion
-                                 (org-roam-up-heading-or-point-min)
-                                 (funcall outline-level)))))
+                            (eq (funcall outline-level)
+                                (save-excursion
+                                  (org-roam-up-heading-or-point-min)
+                                  (funcall outline-level)))))
              (org-roam-up-heading-or-point-min))
            (when-let ((id (org-id-get)))
              (org-roam-populate
@@ -770,7 +779,8 @@ We use this as a substitute for `org-link-bracket-re', because
  "Complete \"roam:\" link at point to an existing Org-roam node."
  (let (roam-p start end)
    (when (org-in-regexp org-roam-bracket-completion-re 1)
-      (setq roam-p (not (string-blank-p (match-string 1)))
+      (setq roam-p (not (or (org-in-src-block-p)
+                            (string-blank-p (match-string 1))))
            start (match-beginning 2)
            end (match-end 2))
      (list start end
@@ -792,6 +802,7 @@ outside of the bracket syntax for links (i.e. \"[[roam:|]]\"),
 hence \"everywhere\"."
  (when (and org-roam-completion-everywhere
             (thing-at-point 'word)
+             (not (org-in-src-block-p))
             (not (save-match-data (org-in-regexp org-link-any-re))))
    (let ((bounds (bounds-of-thing-at-point 'word)))
      (list (car bounds) (cdr bounds)
@@ -1032,7 +1043,9 @@ and when nil is returned the node will be filtered out."
 ;;;; Editing
 (defun org-roam-ref-add (ref)
  "Add REF to the node at point."
-  (interactive "sRef: ")
+  (interactive `(,(if org-roam-ref-prompt-function
+                      (funcall org-roam-ref-prompt-function)
+                    (read-string "Ref: "))))
  (let ((node (org-roam-node-at-point 'assert)))
    (save-excursion
      (goto-char (org-roam-node-point node))
--- a/lisp/org-roam/org-roam-pkg.el
+++ b/lisp/org-roam/org-roam-pkg.el
@@ -1,11 +1,12 @@
-(define-package "org-roam" "20221205.355" "A database abstraction layer for Org-mode"
+(define-package "org-roam" "20230307.1721" "A database abstraction layer for Org-mode"
  '((emacs "26.1")
    (dash "2.13")
    (org "9.4")
-    (emacsql "3.0.0")
-    (emacsql-sqlite "1.0.0")
+    (emacsql "20230228")
    (magit-section "3.0.0"))
-  :commit "f9228ce31969cab9ca46ad4890e82e2ea7de3738" :authors
+  :commit "5c06471c3a11348342719fd9011486455adeb701" :authors
+  '(("Jethro Kuan" . "jethrokuan95@gmail.com"))
+  :maintainers
  '(("Jethro Kuan" . "jethrokuan95@gmail.com"))
  :maintainer
  '("Jethro Kuan" . "jethrokuan95@gmail.com")
--- a/lisp/org-roam/org-roam-utils.el
+++ b/lisp/org-roam/org-roam-utils.el
@@ -120,7 +120,7 @@ SPEC is a list, as per `dolist'."
 ;;; File utilities
 (defun org-roam-descendant-of-p (a b)
  "Return t if A is descendant of B."
-  (unless (equal (file-truename a) (file-truename b))
+  (unless (and a b (equal (file-truename a) (file-truename b)))
    (string-prefix-p (replace-regexp-in-string "^\\([A-Za-z]\\):" 'downcase (expand-file-name b) t t)
                     (replace-regexp-in-string "^\\([A-Za-z]\\):" 'downcase (expand-file-name a) t t))))

@@ -227,9 +227,9 @@ Like `org-fontify-like-in-org-mode', but supports `org-ref'."
  ;; `org-fontify-like-in-org-mode' here
  (with-temp-buffer
    (insert s)
-    (let ((org-ref-buffer-hacked t)
-          (org-fold-core-style 'overlays))
+    (let ((org-ref-buffer-hacked t))
      (org-mode)
+      (setq-local org-fold-core-style 'overlays)
      (font-lock-ensure)
      (buffer-string))))

--- a/lisp/org-roam/org-roam.el
+++ b/lisp/org-roam/org-roam.el
@@ -6,7 +6,7 @@
 ;; URL: https://github.com/org-roam/org-roam
 ;; Keywords: org-mode, roam, convenience
 ;; Version: 2.2.2
-;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (emacsql "3.0.0") (emacsql-sqlite "1.0.0") (magit-section "3.0.0"))
+;; Package-Requires: ((emacs "26.1") (dash "2.13") (org "9.4") (emacsql "20230228") (magit-section "3.0.0"))

 ;; This file is NOT part of GNU Emacs.

@@ -152,31 +152,40 @@ responsibility to ensure that."
    '(find fd fdfind rg))
  "Commands that will be used to find Org-roam files.

-It should be a list of symbols or cons cells representing any of the following
-supported file search methods.
+It should be a list of symbols or cons cells representing any of
+the following supported file search methods.

-The commands will be tried in order until an executable for a command is found.
-The Elisp implementation is used if no command in the list is found.
+The commands will be tried in order until an executable for a
+command is found. The Elisp implementation is used if no command
+in the list is found.

  `find'
+
    Use find as the file search method.
    Example command:
-    find /path/to/dir -type f \( -name \"*.org\" -o -name \"*.org.gpg\" \)
+      find /path/to/dir -type f \
+        \( -name \"*.org\" -o -name \"*.org.gpg\" -name \"*.org.age\" \)

  `fd'
+
    Use fd as the file search method.
-    Example command: fd /path/to/dir/ --type file -e \".org\" -e \".org.gpg\"
+    Example command:
+      fd /path/to/dir/ --type file -e \".org\" -e \".org.gpg\" -e \".org.age\"

  `fdfind'
+
    Same as `fd'. It's an alias that used in some OSes (e.g. Debian, Ubuntu)

  `rg'
-    Use ripgrep as the file search method.
-    Example command: rg /path/to/dir/ --files -g \"*.org\" -g \"*.org.gpg\"

-By default, `executable-find' will be used to look up the path to the
-executable. If a custom path is required, it can be specified together with the
-method symbol as a cons cell. For example: '(find (rg . \"/path/to/rg\"))."
+    Use ripgrep as the file search method.
+    Example command:
+       rg /path/to/dir/ --files -g \"*.org\" -g \"*.org.gpg\" -g \"*.org.age\"
+
+By default, `executable-find' will be used to look up the path to
+the executable. If a custom path is required, it can be specified
+together with the method symbol as a cons cell. For example:
+'(find (rg . \"/path/to/rg\"))."
  :type '(set (const :tag "find" find)
              (const :tag "fd" fd)
              (const :tag "fdfind" fdfind)
@@ -196,7 +205,8 @@ FILE is an Org-roam file if:
    (let* ((path (or file (buffer-file-name (buffer-base-buffer))))
           (relative-path (file-relative-name path org-roam-directory))
           (ext (org-roam--file-name-extension path))
-           (ext (if (string= ext "gpg")
+           (ext (if (or (string= ext "gpg")
+                        (string= ext "age"))
                    (org-roam--file-name-extension (file-name-sans-extension path))
                  ext))
           (org-roam-dir-p (org-roam-descendant-of-p path org-roam-directory))
@@ -290,7 +300,8 @@ If no files are found, an empty list is returned."
 E.g. (\".org\") => (\"*.org\" \"*.org.gpg\")"
  (cl-loop for e in exts
           append (list (format "\"*.%s\"" e)
-                        (format "\"*.%s.gpg\"" e))))
+                        (format "\"*.%s.gpg\"" e)
+                        (format "\"*.%s.age\"" e))))

 (defun org-roam--list-files-find (executable dir)
  "Return all Org-roam files under DIR, using \"find\", provided as EXECUTABLE."
@@ -321,7 +332,7 @@ E.g. (\".org\") => (\"*.org\" \"*.org.gpg\")"
  "Return all Org-roam files under DIR, using Elisp based implementation."
  (let ((regex (concat "\\.\\(?:"(mapconcat
                                  #'regexp-quote org-roam-file-extensions
-                                  "\\|" )"\\)\\(?:\\.gpg\\)?\\'"))
+                                  "\\|" )"\\)\\(?:\\.gpg\\|\\.age\\)?\\'"))
        result)
    (dolist (file (org-roam--directory-files-recursively dir regex nil nil t) result)
      (when (and (file-readable-p file)
--- a/lisp/org-roam/org-roam.info
+++ b/lisp/org-roam/org-roam.info
@@ -1,4 +1,4 @@
-This is org-roam.info, produced by makeinfo version 7.0.1 from
+This is org-roam.info, produced by makeinfo version 6.8 from
 org-roam.texi.

     Copyright (C) 2020-2022 Jethro Kuan <jethrokuan95@gmail.com>
@@ -24,7 +24,8 @@ File: org-roam.info,  Node: Top,  Next: Introduction,  Up: (dir)
 Org-roam User Manual
 ********************

-This manual is for Org-roam version 2.2.2.
+
+   This manual is for Org-roam version 2.2.2.

     Copyright (C) 2020-2022 Jethro Kuan <jethrokuan95@gmail.com>

@@ -391,14 +392,6 @@ reading the documentation in the Emacs manual, see *note

   Org-roam also depends on a recent version of Org, which can be
 obtained in Org’s package repository (see *note (org)Installation::).
-To use Org’s ELPA archive:
-
-     (add-to-list 'package-archives '("org" . "https://orgmode.org/elpa/") t)
-
-   Once you have added your preferred archive, you need to update the
-local package list using:
-
-     M-x package-refresh-contents RET

   Once you have done that, you can install Org-roam and its
 dependencies using:
@@ -786,19 +779,25 @@ set:

     (setq org-roam-database-connector 'sqlite3)

-   **emacsql-libsqlite3**
-(https://github.com/emacscollective/emacsql-libsqlite3/)
+   **emacssql-sqlite-module**
+(https://melpa.org/#/emacsql-sqlite-module) (previously
+emacsql-libsqlite3)

-   ‘emacs-libsqlite3’ is a relatively young package which uses an Emacs
-module that exposes parts of the SQLite C API to Emacs Lisp, instead of
-using subprocess as ‘emacsql-sqlite’ does.  It is expected to be a more
-performant drop-in replacement for ‘emacs-sqlite’.
+   ‘emacs-sqlite-module’ is a relatively young package which uses an
+Emacs module that exposes parts of the SQLite C API to Emacs Lisp,
+instead of using subprocess as ‘emacsql-sqlite’ does.  It is expected to
+be a more performant drop-in replacement for ‘emacs-sqlite’.

-   At the moment it is experimental and does not work well with the SQL
-query load required by Org-roam, but you may still try it by ensuring
-the package is installed and setting:
+     (setq org-roam-database-connector 'sqlite-module)

-     (setq org-roam-database-connector 'libsqlite3)
+   **emacsql-sqlite-builtin**
+(https://melpa.org/#/emacsql-sqlite-builtin)
+
+   ‘emacsql-sqlite-builtin’ uses the in-built SQLite support for Emacs
+29 and later.  This is the recommended option if you are using a version
+of Emacs that supports it.
+
+     (setq org-roam-database-connector 'sqlite-builtin)


 File: org-roam.info,  Node: What to cache,  Next: When to cache,  Prev: How to cache,  Up: Customizing Node Caching
@@ -1868,7 +1867,7 @@ File: org-roam.info,  Node: Garbage Collection,  Up: Performance Optimization
 During the cache-build process, Org-roam generates a lot of in-memory
 data-structures (such as the Org file’s AST), which are discarded after
 use.  These structures are garbage collected at regular intervals (see
-*note info:elisp#Garbage Collection: (elisp)Garbage Collection.).
+*note info:elisp#Garbage Collection: (elisp)Garbage Collection.).

   Org-roam provides the option ‘org-roam-db-gc-threshold’ to
 temporarily change the threshold value for GC to be triggered during
@@ -2621,97 +2620,97 @@ Emacs 29.0.50 (Org mode 9.6)


 Tag Table:
-Node: Top756
-Node: Introduction4512
-Ref: Introduction-Footnote-16657
-Node: Target Audience6766
-Node: A Brief Introduction to the Zettelkasten Method8642
-Node: Installation11800
-Node: Installing from MELPA12164
-Node: Installing from Source13423
-Node: Installation Troubleshooting16406
-Node: C Compiler16608
-Node: C Compiler for Windows17179
-Node: Getting Started18420
-Node: The Org-roam Node18712
-Node: Links between Nodes19540
-Node: Setting up Org-roam19945
-Node: Creating and Linking Nodes21552
-Node: Customizing Node Completions23272
-Node: Customizing Node Caching25492
-Node: How to cache25728
-Node: What to cache27764
-Node: When to cache29892
-Node: The Org-roam Buffer30661
-Node: Navigating the Org-roam Buffer32117
-Node: Configuring what is displayed in the buffer32833
-Node: Configuring the Org-roam buffer display34164
-Node: Styling the Org-roam buffer35665
-Node: Node Properties35877
-Node: Standard Org properties36096
-Node: Titles and Aliases36446
-Node: Tags37447
-Node: Refs38107
-Node: Citations39307
-Node: Using the Cached Information39873
-Node: Completion41020
-Node: Completing within Link Brackets41816
-Node: Completing anywhere42266
-Node: Encryption43042
-Node: The Templating System43798
-Node: Template Walkthrough44515
-Node: Org-roam Template Expansion46359
-Node: Extensions48246
-Node: org-roam-protocol48482
-Node: Installation (1)48944
-Node: Linux49786
-Node: Mac OS51312
-Ref: Testing org-protocol53350
-Node: Windows54363
-Node: The roam-node protocol55106
-Node: The roam-ref protocol55493
-Node: org-roam-graph56672
-Node: Graph Options58569
-Node: org-roam-dailies59591
-Node: Configuration59878
-Node: Usage60675
-Node: org-roam-export62417
-Node: Performance Optimization62937
-Node: Garbage Collection63143
-Node: The Org-mode Ecosystem63939
-Node: Browsing History with winner-mode64436
-Node: Versioning Notes65308
-Node: Full-text search with Deft66099
-Node: Org-journal66850
-Node: Org-download67662
-Node: mathpixel68181
-Node: Org-noter / Interleave68762
-Node: Bibliography69154
-Node: Spaced Repetition69915
-Node: FAQ70571
-Node: How do I have more than one Org-roam directory?71178
-Node: How do I create a note whose title already matches one of the candidates?72749
-Node: How can I stop Org-roam from creating IDs everywhere?73669
-Node: How do I migrate from Roam Research?74363
-Node: How to migrate from Org-roam v1?74860
-Node: How do I publish my notes with an Internet-friendly graph?76269
-Node: Configure org-mode for publishing77711
-Node: Overriding the default link creation function79197
-Node: Copying the generated file to the export directory79869
-Node: I'm seeing this ``Selecting deleted buffer'' error What do I do?80840
-Node: Developer's Guide to Org-roam81898
-Node: Org-roam's Design Principle82172
-Node: Building Extensions and Advanced Customization of Org-roam84162
-Node: Accessing the Database85424
-Node: Accessing and Modifying Nodes86153
-Node: Extending the Capture System88029
-Node: Appendix89571
-Node: Note-taking Workflows89758
-Node: Ecosystem91040
-Node: Keystroke Index91157
-Node: Command Index91308
-Node: Function Index91461
-Node: Variable Index93239
+Node: Top754
+Node: Introduction4514
+Ref: Introduction-Footnote-16659
+Node: Target Audience6768
+Node: A Brief Introduction to the Zettelkasten Method8644
+Node: Installation11802
+Node: Installing from MELPA12166
+Node: Installing from Source13181
+Node: Installation Troubleshooting16164
+Node: C Compiler16366
+Node: C Compiler for Windows16937
+Node: Getting Started18178
+Node: The Org-roam Node18470
+Node: Links between Nodes19298
+Node: Setting up Org-roam19703
+Node: Creating and Linking Nodes21310
+Node: Customizing Node Completions23030
+Node: Customizing Node Caching25250
+Node: How to cache25486
+Node: What to cache27679
+Node: When to cache29807
+Node: The Org-roam Buffer30576
+Node: Navigating the Org-roam Buffer32032
+Node: Configuring what is displayed in the buffer32748
+Node: Configuring the Org-roam buffer display34079
+Node: Styling the Org-roam buffer35580
+Node: Node Properties35792
+Node: Standard Org properties36011
+Node: Titles and Aliases36361
+Node: Tags37362
+Node: Refs38022
+Node: Citations39222
+Node: Using the Cached Information39788
+Node: Completion40935
+Node: Completing within Link Brackets41731
+Node: Completing anywhere42181
+Node: Encryption42957
+Node: The Templating System43713
+Node: Template Walkthrough44430
+Node: Org-roam Template Expansion46274
+Node: Extensions48161
+Node: org-roam-protocol48397
+Node: Installation (1)48859
+Node: Linux49701
+Node: Mac OS51227
+Ref: Testing org-protocol53265
+Node: Windows54278
+Node: The roam-node protocol55021
+Node: The roam-ref protocol55408
+Node: org-roam-graph56587
+Node: Graph Options58484
+Node: org-roam-dailies59506
+Node: Configuration59793
+Node: Usage60590
+Node: org-roam-export62332
+Node: Performance Optimization62852
+Node: Garbage Collection63058
+Node: The Org-mode Ecosystem63852
+Node: Browsing History with winner-mode64349
+Node: Versioning Notes65221
+Node: Full-text search with Deft66012
+Node: Org-journal66763
+Node: Org-download67575
+Node: mathpixel68094
+Node: Org-noter / Interleave68675
+Node: Bibliography69067
+Node: Spaced Repetition69828
+Node: FAQ70484
+Node: How do I have more than one Org-roam directory?71091
+Node: How do I create a note whose title already matches one of the candidates?72662
+Node: How can I stop Org-roam from creating IDs everywhere?73582
+Node: How do I migrate from Roam Research?74276
+Node: How to migrate from Org-roam v1?74773
+Node: How do I publish my notes with an Internet-friendly graph?76182
+Node: Configure org-mode for publishing77624
+Node: Overriding the default link creation function79110
+Node: Copying the generated file to the export directory79782
+Node: I'm seeing this ``Selecting deleted buffer'' error What do I do?80753
+Node: Developer's Guide to Org-roam81811
+Node: Org-roam's Design Principle82085
+Node: Building Extensions and Advanced Customization of Org-roam84075
+Node: Accessing the Database85337
+Node: Accessing and Modifying Nodes86066
+Node: Extending the Capture System87942
+Node: Appendix89484
+Node: Note-taking Workflows89671
+Node: Ecosystem90953
+Node: Keystroke Index91070
+Node: Command Index91221
+Node: Function Index91374
+Node: Variable Index93152

 End Tag Table